Package: OpEnCAMeO 0.1.1
OpEnCAMeO: Optimized Ensemble Predictor for 'C' and 'A' Methylation in Organism
DNA methylation is an important epigenetic process that regulates gene activity through chemical modifications of DNA without changing its sequence. 'OpEnCAMeO' is a organism based ensemble model for prediction of 4mC, 6mA and No methylation sites directly from DNA sequences. It combines multiple machine learning algorithms trained on Bacteria (Escherichia coli), Fungi (Saccharomyces cerevisiae) and Nematode (Caenorhabditis elegans) as reference models to deliver accurate predictions. This methodology is being inspired by the ensemble algorithm for methylation prediction developed by Sinha et al. (2025) <doi:10.1101/2025.11.10.687509>.
Authors:
OpEnCAMeO_0.1.1.tar.gz
OpEnCAMeO_0.1.1.zip(r-4.7-any)OpEnCAMeO_0.1.1.zip(r-4.6-any)OpEnCAMeO_0.1.1.zip(r-4.5-any)
OpEnCAMeO_0.1.1.tgz(r-4.6-any)OpEnCAMeO_0.1.1.tgz(r-4.5-any)
OpEnCAMeO_0.1.1.tar.gz(r-4.7-any)OpEnCAMeO_0.1.1.tar.gz(r-4.6-any)
OpEnCAMeO_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OpEnCAMeO/json (API)
| # Install 'OpEnCAMeO' in R: |
| install.packages('OpEnCAMeO', repos = c('https://abhiksarkariasri.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7caf87fe97. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 175 | ||
| source / vignettes | OK | 248 | ||
| linux-release | OK | 193 | ||
| macos-release | OK | 182 | ||
| macos-oldrel | OK | 195 | ||
| windows-devel | OK | 127 | ||
| windows-release | OK | 120 | ||
| windows-oldrel | OK | 106 | ||
| wasm-release | OK | 149 |
Exports:Bacteria_MethPredFungi_MethPredNematode_MethPred
Dependencies:ade4BiocGenericsBiostringsclicrayonelmNNRcppentropyftrCOOLgenericsglueIRangesKernelKnnlatticelifecyclemagrittrMASSnlmepillarpixmappkgconfigRcppRcppArmadillorlangS4VectorssegmentedSeqinfoseqinrspstringistringrtibbleutf8vctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DNA Methylation Prediction in Bacteria | Bacteria_MethPred |
| DNA Methylation Prediction in Fungi | Fungi_MethPred |
| DNA Methylation Prediction in Nematode | Nematode_MethPred |