Package: OpEnCAMeO 0.1.1

OpEnCAMeO: Optimized Ensemble Predictor for 'C' and 'A' Methylation in Organism

DNA methylation is an important epigenetic process that regulates gene activity through chemical modifications of DNA without changing its sequence. 'OpEnCAMeO' is a organism based ensemble model for prediction of 4mC, 6mA and No methylation sites directly from DNA sequences. It combines multiple machine learning algorithms trained on Bacteria (Escherichia coli), Fungi (Saccharomyces cerevisiae) and Nematode (Caenorhabditis elegans) as reference models to deliver accurate predictions. This methodology is being inspired by the ensemble algorithm for methylation prediction developed by Sinha et al. (2025) <doi:10.1101/2025.11.10.687509>.

Authors:Abhik Sarkar [aut, cre], Dipro Sinha [aut], Sneha Murmu [aut], Md Yeasin [aut], Dwijesh Chandra Mishra [aut], Sunil Archak [aut]

OpEnCAMeO_0.1.1.tar.gz
OpEnCAMeO_0.1.1.zip(r-4.7-any)OpEnCAMeO_0.1.1.zip(r-4.6-any)OpEnCAMeO_0.1.1.zip(r-4.5-any)
OpEnCAMeO_0.1.1.tgz(r-4.6-any)OpEnCAMeO_0.1.1.tgz(r-4.5-any)
OpEnCAMeO_0.1.1.tar.gz(r-4.7-any)OpEnCAMeO_0.1.1.tar.gz(r-4.6-any)
OpEnCAMeO_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OpEnCAMeO/json (API)

# Install 'OpEnCAMeO' in R:
install.packages('OpEnCAMeO', repos = c('https://abhiksarkariasri.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 280 downloads 3 exports 34 dependencies

Last updated from:7caf87fe97. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK175
source / vignettesOK248
linux-releaseOK193
macos-releaseOK182
macos-oldrelOK195
windows-develOK127
windows-releaseOK120
windows-oldrelOK106
wasm-releaseOK149

Exports:Bacteria_MethPredFungi_MethPredNematode_MethPred

Dependencies:ade4BiocGenericsBiostringsclicrayonelmNNRcppentropyftrCOOLgenericsglueIRangesKernelKnnlatticelifecyclemagrittrMASSnlmepillarpixmappkgconfigRcppRcppArmadillorlangS4VectorssegmentedSeqinfoseqinrspstringistringrtibbleutf8vctrsXVector