{
  "_id": "6ac4c1d7f511ae58c09a0e94",
  "Package": "OpEnCAST",
  "Type": "Package",
  "Title": "Optimized Ensemble Model for C and A Methylation Search in Plant",
  "Version": "0.1.1",
  "Authors@R": "c(person(\"Abhik\", \"Sarkar\", role = c(\"aut\",\"cre\"), email = \"abhik.iasri@gmail.com\"),\nperson(\"Dipro\", \"Sinha\", role = c(\"aut\")),\nperson(\"Sneha\",\"Murmu\", role=c(\"aut\")),\nperson(\"Md\", \"Yeasin\", role = c(\"aut\")),\nperson(\"Dwijesh Chandra\",\"Mishra\", role = c(\"aut\")),\nperson(\"Sunil\", \"Archak\", role = c(\"aut\")))",
  "Author": "Abhik Sarkar [aut, cre], Dipro Sinha [aut], Sneha Murmu [aut],\nMd Yeasin [aut], Dwijesh Chandra Mishra [aut], Sunil Archak\n[aut]",
  "Maintainer": "Abhik Sarkar <abhik.iasri@gmail.com>",
  "Description": "DNA methylation is an important epigenetic process that\nregulates gene activity through chemical modifications of DNA\nwithout changing its sequence. 'OpEnCAST' is a plant-specific\nensemble-based prediction package that identifies 4mC, 5mC and\n6mA methylation sites directly from DNA sequences. It combines\nmultiple machine learning algorithms trained on monocot (Oryza\nsp.) and dicot (Arabidopsis sp.) reference models to deliver\naccurate predictions. This methodology is being inspired by the\nensemble algorithm for methylation prediction developed by Wang\net al. (2022) <doi:10.1186/s12859-022-04756-1>.",
  "Encoding": "UTF-8",
  "License": "GPL-3",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-06 09:36:00 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "libicu-dev zlib1g-dev",
  "Repository": "https://abhiksarkariasri.r-universe.dev",
  "Date/Publication": "2026-01-08 19:20:22 UTC",
  "RemoteUrl": "https://github.com/cran/OpEnCAST",
  "RemoteRef": "HEAD",
  "RemoteSha": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
  "_user": "abhiksarkariasri",
  "_type": "src",
  "_file": "OpEnCAST_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/d294c58f61d6dea98823178ad3ae2eeab789c1da37875bbd2562109918e4a448",
  "_filesize": 84229,
  "_sha256": "d294c58f61d6dea98823178ad3ae2eeab789c1da37875bbd2562109918e4a448",
  "_expires": "2027-01-14T09:39:33.000Z",
  "_created": "2026-10-06T09:36:00.000Z",
  "_published": "2026-10-06T09:39:35.245Z",
  "_jobs": [
    {
      "job": 112204674282,
      "time": 164,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11403101010"
    },
    {
      "job": 112204674466,
      "time": 146,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11401968702"
    },
    {
      "job": 112204674187,
      "time": 113,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11403090873"
    },
    {
      "job": 112204674169,
      "time": 128,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11403095834"
    },
    {
      "job": 112203342267,
      "time": 207,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11401884991"
    },
    {
      "job": 112204674135,
      "time": 128,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11402337911"
    },
    {
      "job": 112204674324,
      "time": 127,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11403095829"
    },
    {
      "job": 112204674219,
      "time": 138,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11402293085"
    },
    {
      "job": 112204674330,
      "time": 130,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11402467286"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631",
  "_status": "success",
  "_upstream": "https://github.com/cran/OpEnCAST",
  "_commit": {
    "id": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
    "author": "Abhik Sarkar <abhik.iasri@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.1\n",
    "time": 1767900022
  },
  "_maintainer": {
    "name": "Abhik Sarkar",
    "email": "abhik.iasri@gmail.com",
    "login": "abhiksarkariasri",
    "description": "",
    "uuid": 233079720
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Biostrings",
      "role": "Imports"
    },
    {
      "package": "seqinr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "entropy",
      "role": "Imports"
    },
    {
      "package": "ftrCOOL",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Suggests"
    },
    {
      "package": "kernlab",
      "role": "Suggests"
    },
    {
      "package": "ranger",
      "role": "Suggests"
    },
    {
      "package": "xgboost",
      "role": "Suggests"
    },
    {
      "package": "gbm",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.1",
      "date": "2026-01-08"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "abhiksarkariasri",
      "count": 1,
      "uuid": 233079720
    }
  ],
  "_userbio": {
    "uuid": 233079720,
    "type": "user",
    "name": "AbhikSarkarIASRI",
    "followers": 0
  },
  "_downloads": {
    "count": 320,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OpEnCAST"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/OpEnCAST.html"
  ],
  "_realowner": "abhiksarkariasri",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2026-01-08"
    }
  ],
  "_exports": [
    "Dicot_MethPred",
    "Monocot_MethPred"
  ],
  "_help": [
    {
      "page": "Dicot_MethPred",
      "title": "DNA Methylation Prediction in Dicot Plants",
      "topics": [
        "Dicot_MethPred"
      ]
    },
    {
      "page": "Monocot_MethPred",
      "title": "DNA Methylation Prediction in Monocot Plants",
      "topics": [
        "Monocot_MethPred"
      ]
    }
  ],
  "_rundeps": [
    "ade4",
    "BiocGenerics",
    "Biostrings",
    "cli",
    "crayon",
    "entropy",
    "ftrCOOL",
    "generics",
    "glue",
    "IRanges",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "nlme",
    "pillar",
    "pixmap",
    "pkgconfig",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "S4Vectors",
    "segmented",
    "Seqinfo",
    "seqinr",
    "sp",
    "stringi",
    "stringr",
    "tibble",
    "utf8",
    "vctrs",
    "XVector"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "opencast",
  "_universes": [
    "abhiksarkariasri"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-06T09:38:12.000Z",
      "distro": "resolute",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/682d207e211f57c6642a1885e39cab42e56cbf756cb471405f7aa8b2f9d77ab8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-06T09:38:11.000Z",
      "distro": "resolute",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/6e5b7a416e51b5febfaab2507d2238bf47c494ee5a91b77e0973f6755aaa80be",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-06T09:37:39.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/4c11144ee1a950accc21fe33052bc57345b9d9f03d2f2f360d0505f40beb4e8b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-06T09:37:49.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/1cf6e82b138f10e22005e3bc7d94235245809763b7b6cd97573f2f6144de6144",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-10-06T09:38:25.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/a601770c45b4ba85911fc64d0ab43b8b5cc97e8d7db945c10ae0b665b1f07625",
      "status": "success",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-06T09:37:31.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/ed2439bdccbdebce8274ad8228d3f80557625ced23b85674ee8b7ea959bfb035",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-06T09:37:49.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/cecb7c8a214c51ffbcde26e3d12a0973cdba9049f724ea414cc64c9a8a1e796f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-06T09:37:40.000Z",
      "commit": "fd03bdcf8c7ac6386bd4087903f0d9627338b850",
      "fileid": "https://r2.ropensci.org/cc55d2814817094c873f681a76af5048cfde1394a912bcb31bca53cd4eb67241",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/abhiksarkariasri/actions/runs/37443598631"
    }
  ]
}